I can only imagine the hurdle you've been through in fixing the alignment issues when printing 1099-NEC, @Kristi27.

I've got additional information to share with you about managing Company Preferences in QuickBooks Desktop. This will us with remapping 1099.

Here's how you can do it:

1. Open the Edit menu then select Preferences.
2. Click on Tax 1099.
3. Under Company Preferences, click on Yes, I send 1099s.
4. Select Map form 1099 Misc > Omit these payments from 1099.
5. Once done, go back to the Edit menu.
6. Select Preferences then Company Preferences.
7. Click on Yes, I send 1099s then Map form 1099 NEC.
8. Lastly, click on NEC: Box 1 Nonemployee Compensation.

If you're still having the same problem, I suggest contacting the Customer Support team. Rest assured, they're able to look into this further and give you the best answer to your concern. 

Feel free to comment back if you need further help with payroll forms or QuickBooks. We're here to back you and your business. Stay safe!