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There's a few reasons why previously reconciled transactions can show up as unreconciled:
As BigRedConsulting mentioned, you can perform a special reconciliation to correct these problems.
Here's how:
1. In the top menu bar, go to Banking, then Reconcile.
2. Choose which bank account you're working with.
3. Use the Date of Statement field to enter a date for an off-cycle reconcile. This can be any day between your last reconciliation and the one that's scheduled next.
4. Enter a balance for your last successful reconciliation in the Ending Balance field.
5. Click Continue.
6. On the Reconcile window, check off each transaction you're fixing.
7. Confirm your Difference field shows $0.00.
8. Select Reconcile Now.
I've also included a detailed resource that provides more information about performing special reconciliations: Reconcile previously deleted & re-entered checking or credit card transactions
Feel more than welcome to post a reply if there's any questions. I'll be here to help. Have a wonderful day!