Hi, Accounting Zengrowth.

Yes, you'll be now tracking VAT in both places in QuickBooks Online.

I'll be sharing with you the following resources to know more about how VAT works in QuickBooks Online. On the same link, you'll find other write-ups about handling VAT codes:

Set up and edit VAT settings, codes and rates.

QuickBooks VAT codes.

Additionally, in case you want to know some "How do I" steps in QuickBooks Online, you can always visit our Help Articles page for reference.

Feel free to drop me a reply below if you have any other concerns. I'll be standing by to answer them for you. Have a good one.