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Thanks for joining the thread, @Ellie92.
I'll help you handle customer's overpayments in QuickBooks Online.
We can record the transaction using a Cheque or Expense. Thus, it offsets the credit balance that is shown in QBO. Once you're ready, here's how you can do it:
Once done, you can follow Step 2 from this article to link the refund to the customer's credit: Record a customer refund in QuickBooks Online.
If you want to make a credit into a tip, feel free to visit this resource: Record an invoice overpayment as a tip.
If you have more questions about customer transactions in QBO, I'd be glad to lend a helping hand. Take care always, and happy holidays.