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You can manually clear these transactions in your bank register. Here's how: 

1. Open the bank register and look for these transactions.
2. Select a payment and click on it.
3. Go to the Reconcile and Banking Status column, then click the space or box underneath it until the C status appears. 
4. Click Save. 

Let me also share these articles to share more details:

• Fix issues when you're reconciling accounts in QuickBooks Online 
• Fix beginning balance issues if you've reconciled the account in the past QuickBooks Online

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