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Currently, this feature isn't available in QuickBooks Online (QBO). When generating a profit and loss report, you can only choose a specific class filter to run through in customizing reports in QuickBooks Online.
Indeed, you are correct about adding transactions whose classes are currently unspecified. However, there is no way in which you can generate all unspecified classes in bulk. To merge the specified and unspecified classes, manually add, and delete transactions with unspecified classes that are not included, then export them to Excel.
For now, I encourage you to submit feature feedback to our development team. Rest assured that we're going to review your feedback in the next software update, subject to the number of users with the same issue.
Here's how you can submit feedback:
Moreover, check this article for a list of custom reports in QBO, along with the steps on how to generate them: Common custom reports in QuickBooks Online.
Please let me know if you need further assistance or have additional questions about running your report by classes in QBO. I'm always here to help.