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Buy nowGreat to see you in this thread, milesconstruction. Thanks for sharing the troubleshooting steps you’ve taken. I'm here to help make sure your billable expenses are sorted out correctly.
Yes, you're correct. When you go to the reports page and click on the Billed label you will be redirected to the payroll check/expense transactions associated with the deleted invoice.
On the transactions page, you can find the billable expenses and mark them as billable again before applying them to the invoice. Make sure the invoice includes the correct markup to prevent any issues down the line.
I've added screenshots for your reference.
I've added this article to learn more about how to modify your template in QBDT: Customize form.
You can also consider checking out this article about tracking jobs in QuickBooks: Track job costs in QuickBooks Desktop.
You can always revisit this page if you have follow-up questions about billable expenses in QBDT. We're always here willing to assist.