These are most likely sitting up in undeposited funds.  You need to "make deposits" that will match how they land in the bank.  Pull the bank statement if needed to see.  Go to +New, then under Other, choose Bank Deposit. All of the items sitting in Undeposited funds that you have received will be there.  Make a deposit for each, to match the day received or the day it hits the bank, and make sure the amounts are deposited the same way as it hits the bank so bank reconciliation will not be a huge pain.

Hope that helps.