Thanks for joining this thread, Whoadeb. I can help provide insight to track Etsy fees manually on invoices in QuickBooks Desktop.

In QuickBooks, the program depends on the transactions downloaded from your Etsy account. If you've already created an invoice entry without fees being applied yet, you can create an account to Receive Payment transactions to the Undeposited Funds. Then, utilize the Bank Deposits and use an expense fee account to it. This way, these fees are recorded in your QuickBooks data.

Once done, match the bank deposit created to the downloaded payment transaction. To do this: 

1. On the Homepage, select Record Deposits / Make Deposits.
2. In the Payments to Deposit window, select the payments you want to combine. Then select OK.
3. In the Make Deposits window, select the account you want to put the deposit into from the Deposit to dropdown.
4. Check the deposit total. Make sure the account and selected payments match the deposit slip from your bank. Use your deposit slip as a reference.
5. Enter the date you deposited at your bank.
6. Add a memo as needed.
7. When you're done, select Save & Close.

In addition to that, you can run specific reports to track aging or uncleared transactions in your file. Once everything looks good, start reconciling your data to ensure all entries match your bank and credit card statements.

I'm all ears to any additional queries you may have when managing fees on invoices in your account. You can always drop a comment below, and I'll be around to get you covered. Keep safe and have a good one!