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You can remove payment methods from your Payment methods list screen.
Here's how:
If you don't see PayPal listed as a payment method on the Payment method list, or you did and you made it inactive, but it's still showing as a payment method when recording sales receipts, I'd also recommend checking your Sales settings:
I've also included a detailed resource about using PayPal with QuickBooks which may come in handy moving forward: Use PayPal
I'll be here to help if there's any additional questions. Have a great Tuesday!