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Let me share some information about INV-90151.
As of the moment, the investigation is still in progress, but they found a workaround. Our engineers found the root cause of this issue and are now working to deploy a fix.
The main issue arises from editing (overriding FIT and SIT tax) on the Preview Payroll screen. This results in only the last edited check retaining the project data. To correct this, edit the FIT and SIT tax on the Enter Hours screen.
To work around this issue, please make the tax edits on the Enter Hours screen, where you enter the hours for each employee. On the far right of the screen, there is an Actions column with three vertical dots stacked on top of each other. Click those dots to open the check and edit the tax amount here. Do not proceed to the Preview Payroll screen (the next screen) to make your edits.
I'm also adding this article to help you use projects to track your labor costs and profitability for future reference: Track hourly labor costs and profitability by project in QuickBooks Online.
Feel free to click the Reply button below if you have questions about managing projects in QuickBooks Online. I'm always here to help. Have a great day.