I have the same issue. It's not that the entry is actually a bank check, it's that the entry from the bank is TREATED as a check in the checking account, instead of allowing it to be assigned as an expense. Each entry (debit card, etc) has to manually be change to reflect that it is an expense and not a true check. The only work-around I have found is to create a rule, which give the option of selecting expense vs check, and applies it to all the matching entries. I hope this helps, and I hope QBO finds a way to allow all bank imports into checking to be assigned as DEPOSIT or EXPENSE or check, etc, as appropriate vs automatically assuming it's a check.