It would seem that the report you have mentioned is no longer available.  The Transaction reports available are:

• 1099 Transaction Detail Report
• Recent Transactions
• Transaction List by Date
• Transaction List by Tag Group
• Transaction List by Vendor

I have run each of these and the option to add the "CLR" field is available, but the filter is not.

So the question remains, how to we filter on the Clr field (or cleared)?  This seems like the ability to filter on any field should be an option.