Grow up QuickBooks! It's often surprising how something as simple as having 2 deposit accounts can't be done by QBO which hires or should hire the best talent there. 1 business with 1 Quickbooks account can have payments go to 2 different checking accounts? Common. This is so commonly used by restaurants with several locations and catering business. You have your 1 location with 1 business checking account and then another location with another business checking account. You want the payments to go to specific location and then match the received payment instead of manually changing accounts. Very simple simple solution, class 1/A goes to this account, class 2/B goes to another checking account. It's Feb 26th 2022, lets see how long it will take Quickbooks to come up with a solution.