Ok, I found my answer.

What I did is, I went to Expense, select the bill in foreign currency, click schedule payment and choose the date (when it was paid in the bank), and choose less amount (say 15000 was a bill, so I choose 14000 (equivalent to 1 payment in the bank in Home currency) and mark as paid). Then save. Then again open the bill, mark it as paid and the balance amount will reflect 1000 so I did that with the date of 2nd bank payment.

Now go to the Bank review tab, and find a match and you will match this to bill payment 1 and bill payment 2 for both bank payments. The currency will auto adjust.

This is a bit lengthy process but it works. QB needs to do something like allow match of 2 bank transactions with 1 foreign currency bill. Until then I have to use this method.

Regards,

Navneet