Your answer does make sense, however, the transaction I'm having an issue is wanting to reconcile in my client's checking account, however, it is a transaction that was actually on the client's credit card. So I deleted the transaction out of the register and then excluded it out of the bank feed in the transactions. Now it keeps telling me in the reconciliation screen of the checking account (which remember it's not even a checking account transaction, it's on the credit card) that my balance is off be that exact amount. 

What do I do here?