@Pgaff 

RE: That's not right. Payments made by monthly bank drafts will come through the bank feed, they are not deposits. The question is how to match the bank drafts to bills that are entered. 

Sorry. I got turned around and thought you were asking about AR and customer payments.

For AP it's a similar issue.  You can't download a check/payment from the bank and record it as a Bill Payment. Instead, record the Bill Payment transactions using Pay Bills when you initiate them, and then when you download them from your bank, they'll match based on date and amount.