Hi there, @NEMorgan99. 

I'm glad to see you posting here in QuickBooks Community to let me provide information and address your concern.

Let's turn on the inventory item feature before you import your file so that the item type will appear on the list in the mapping of your file.

Here's how:

1. Choose Reports.
2. Search for the Journal Report in the search bar.
3. Pick Run Report.

On the other hand, you can find the deleted and re-issued check by utilizing the Audit log. You can follow these steps below:

Here's how:

1. Click the Gear icon.
2. Select Audit Log.
3. Select Filter.
4. Use the fields on the Filter panel to choose the appropriate User, Date, or Events filter to narrow the results.
5. Select Apply.

You can learn more about this here on this link: Learn about the audit log.

Additionally, when we delete paychecks in QuickBooks, the system will auto-create an adjustment check to zero out the check. Hence, I highly suggest consulting your accountant for proper guidance. They know better how to handle this matter.

For future reference, you can refer to this article on how to handle your tax overpayment: Resolving a tax overpayment.

I want to make sure everything is taken care of for you, please let me know how it goes or if you have any other issues or concerns. Just leave a comment below and I'll get back to you. You have a good one.