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You can follow AlexV's detailed steps to apply a credit memo to an invoice without receiving any money from your customer.
If for some reason you continue receiving a negative amount, I'd recommend getting in touch with our Customer Care team. They'll be able to pull up your account in a secure environment, conduct further research, and create an investigation ticket if necessary.
They can be reached while you're signed in.
Here's how:
Be sure to review their support hours so you'll know when agents are available.
I'll be here to help if there's any questions. Have a lovely day!