Thanks for reaching out to the Community, WGBCFinance.

I've got a way you may consider doing to record the donation fees paid by a donor in QuickBooks Desktop.

You'll want to create a Sales Receipt then choose Undeposited Funds in the Deposit To drop-down menu, not the bank account.

Then, create a Bank Deposit to the bank account. Here's how:

1. Go to the Banking menu 
2. Select Make Deposits and you will see the amount in full.
3. In the Select Existing Payments section, select it.
4. In the Add New Deposit section of the same deposit, enter the amount of the fee as a negative.
5. Select the bank where you want to deposit the funds.
6. Click Save and Close.

With these steps, your net amount deposit should match what's in your bank feeds.

You can check the deposit payments into the Undeposited Funds account in QuickBooks Desktop for additional information.

Let me know how the steps work for you. I want to make sure you'll get back to business.