Welcome to Community @ayu,

Let me share my idea on how you record that transaction. You can receive the full amount of the payment and deposit it in your QuickBooks Online account, add an expense in the Add funds to deposit field to record the Paypal fees. Follow these steps on how to record your transaction in making a deposit. Here's how:

1. Go to the + New icon.
2. Under the Other column, select the Bank deposit tab.
3. On the Account drop-down arrow, choose the account where the money will be deposited.
4. Put a checkmark on the payment you want to deposit.
5. On the Add funds to this deposit field, enter the customer where you received the payment.
6. Use an expense account in the Account field.
7. Select the payment method and the amount of the expense.
8. Click the Save and Close button.

For your future help, you can read this article in case you'll need help looking for the missing payments in the bank deposit window.

If you have follow-up questions, feel free to leave a message in the comment section. I'll be happier to help. Have a wonderful day!