I am in the same situation you were in four years ago.  Except I was not familiar with Quick Books at all when I took on the church financial duties.  How did you set this up for your designated funds? What types of accounts do you have them set up as.  And though my check register has the correct bank balance for the designated accounts, the funds that make up this account do not.  How do I find what else is linking to this bank account?

Thanks for any help you can give.