QuickBooks Online for 1099s does not align for me either.

Tried 2 browsers - Edge and Chrome.

Tried direct printing 1099s and also to PDF then printing 1099s.

Neither test lined up correctly. I should not have to DL a 3rd browser.

Using same layout as last years forms as forms are not year specific anymore. Last years aligned. This year it does not. 

3 years ago they changed the spacing for the deposits. The Intuit ordered deposit slip still print on 2 pages after increasing the spacing between the lines. Plus the constant resetting of reports in the new layout is frustrating. Used to be able to pull a whole year of customer deposits report and scroll down fast. Now the new reports you scroll down wait for it to reload and repeat about 10 times. Done with giving feedback with nothing ever fixed. 

I don't expect this to be corrected either.