Having the same problem, as I'm sure every other customer with multiple Chase cards is. Since we pay Intuit about $400/month for their product, a better solution than some stock answers might be nice. As has been pointed out in this thread, QB is clearly aware of the issue because the message has been displayed in the product since 12/13. 

We are nearing yearend for many companies (including ours). I need to be able to reconcile statements and let cardholders know which transactions I'm missing receipts from. I cannot give them good information until this is fixed, and additionally cannot close our books. This is a huge problem for us.