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Here, Intuit explains how to repay employees for company expenses paid for by the employee:

https://quickbooks.intuit.com/learn-support/en-us/help-article/payroll-additions-deductions/reimburs...

What this article fails to address is how to do this via payroll. Note: It does suggest using a liability account as the clearing account which is correct.

The issue with attempting to reimburse employees via payroll is that QuickBooks Payroll only allows a reimbursement to be linked to an expense account, not a liability account.

Categorizing an employee reimbursement as an expense is NOT the best practice accounting method. When a business files their taxes, they must be able to categorize all of their expenses. Simply saying that "I repaid an employee for business expenses" isn't satisfactory. Instead, the expense incurred by the employee for gasoline in a company truck should be entered as an EXPENSE for gasoline with the PAYMENT ACCOUNT being Employee Reimbursements (a liability account). When it is time to repay that employee, the payroll reimbursement should be mapped to the same Employee Reimbursement liability account to clear it out.

At the time Employee A swipes their personal card for company fuel at a Shell station, the company has incurred an expense from Shell Oil and a has incurred a liability to Employee A. At the time the employee is repaid through payroll, the company is repaying that liability and closing it out.

Issue #1: QuickBooks does not allow a liability account as a payment account. It only allows banks, credit card, and asset accounts - unless adding an expense from the receipts screen in which case, it works fine.

Issue #2: QuickBooks Payroll. does not allow the mapping of Employee Reimbursements to a liability account. It only allows it to an expense account. From an accounting standpoint, this is incorrect.

Here are a few dozen others who agree with me:

https://quickbooks.intuit.com/learn-support/en-us/employees-and-payroll/reimbursed-employee-for-expe...

https://quickbooks.intuit.com/learn-support/en-us/help-article/payroll-additions-deductions/reimburs...

https://quickbooks.intuit.com/learn-support/en-ca/employees-payroll/possible-to-map-expense-reimburs...

https://quickbooks.intuit.com/learn-support/en-us/other-questions/expenses-reimbursed-to-employees/0...