Pretty sure QBSE does not handle employees which you must be if you file taxes as an S-Corp since you must pay yourself a salary with payroll taxes deducted before you can take an Distributions of profit from your equity. As S-Corp, you will not use Schedule C, must use IRS 1120s for S-Corp. I have been S-Corp for 15 years.and done accounting for 35 years but I do not do taxes.