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Hey there, GDvanderWalt.
To ensure that the VAT is allocated to the correct agencies, you can create a custom tax agency and assign their number. Here's how:
You can refer to this article for more details: How to set up sales tax in QuickBooks Desktop. Even if this article is for QuickBooks Desktop CA, the same principles can be applied to your Global account.
Additionally, you can visit the following resources. These will provide you steps on how to add an agency in QuickBooks Online as well as assigning a VAT to your products:
Set up and use VAT in QuickBooks Online.
Feel free to drop me a reply below if you need additional help.