I'm also receiving net amounts because of having fees deducted and can't get match to find my sales receipt.  Obviously the amounts don't match because the bank deposit is for the net amount and the sales receipt is before the fees are deducted.

What I expect to happen is for the sales receipt to appear in the list of transactions and then I would select Resolve difference where I would make the entry for the transaction processing fee.  The date of the Sales Receipt is within the range.

I can get the transactions to match if I use a manual journal entry but that is far from ideal.