Hello Stevemdp

Having looked at the link that tells you how to record fees,however if you for example have an invoice for a customer but the amount paid comes through with fees removed you would also need to do an additional action on the invoice.In the invoice go to receive payment and change the bank account to undeposited funds.If you then go to bank deposit in the +symbol and then tick the invoice and then do the expense to the fee account in the add funds to this deposit  using the - by the amount for the fee.Then the amount deposited to the bank should match the same amount in the bank feed

If you have already done this and it does not if you can reply back onto the Community thread with a screenshot from the bank deposit itself and we will look at this further

Thanks

Emma