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Let me break down your questions to make sure I'm able to address everything, KA2022.
When you enter a transaction before downloading the bank transactions, you'll need to do it with the existing transaction.
Here's how:
Here's an article that you might find helpful when matching and managing your downloaded transactions: Categorise and match online bank transactions in QuickBooks Online.
Moving on to your next question, if you're trying to match a downloaded transaction that was a lump sum payment for multiple invoices, you'll want to utilize the Undeposited Funds account to make a deposit.
Here are the steps for recording the payments to Undeposited Funds:
If the invoices are for multiple customers, you will need to receive payment for each one and deposit them to Undeposited Funds.
Now it's time to make the deposit for these funds, here's how:
More information about making bank deposits can be found in this article: Record and make bank deposits in QuickBooks Online.
This deposit will now match the lump sum payment for several different invoices.
For additional resources about managing your banking transactions, you can check out the topics from this link: Find help with bank feeds and reconciling accounts for QBO.
Please let me know how else I can help you with your bank transactions by adding a comment below. Have a good one!