I can help you with clearing the balance showing from your reports, @anjum.

You can create an adjustment to decrease the amount of GST payment to match what you've paid. To do it, you'll just have to set up an account for GST adjustment from your Chart of accounts. Then, create the adjustment from the Taxes menu. 

Here's how to create an account that you can use when creating an adjustment:

1. Go to the Gear icon and choose Chart of accounts.
2. Click on New at the top right.
3. From the Account Type dropdown, select Income.
4. Use Sales of Product Income for an income account for the account’s Detail Type.
5. Set the account's name.
6. Click on Save and Close once done.

Once done, go to the Taxes page to create the adjustment:

1. Go to the Taxes menu.
2. Locate the tax period and click on Tax Adjustment.
3. Set the Account for adjusting tax.
4. Enter the Debits or Credits amount.
5. Provide all the necessary information.
6. Click on Save and close.

For detailed guidance about adding a GST payment, refer to this article: Create or delete a GST adjustment. This will show you how to set up an account and add an adjustment.

You can run a GST sales summary report to see your lists of all your GST payments. It includes GST agency, the taxable amount of sales, and payments: Manage GST payments in QuickBooks Online.

That's it! If need further guidance creating this adjustment or anything else, let me know in the Reply section below. Have a wonderful day!