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Hi ysong17,
Thanks for posting in the Community.
When you match payments made for payroll and used Payroll Clearing and Superannuation Payable, you'll need to select Out of scope tax code.
Transactions with GST-free purchases tax code are reported on BAS whereas transactions with out of scope tax are not. This article will provide you more information on the difference of these tax codes when applied on a transaction.
You can also check on this article about matching payroll payments in QuickBooks Online.
Feel free to leave a comment below if you have any other questions. Have a great day!