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Hi MrMiyagi,
Thanks for posting in the Community!
This depends on how you've recorded the loan amount in QuickBooks Online. I would recommend reaching out to your accountant to guide you on what's best to record the loan amount.
In QuickBooks you can record the loan amount under a liability account.
When you're ready to pay the loan amount. Use the Expense transaction to record them.
Then, to close the invoice you can record invoice payment through + New, and click Receive payment.
You can check this link to learn more about Set up a loan in QuickBooks Online.
Feel free to post your concerns in the Community or click the Reply button for follow-up questions. We'll be happy to help. Have a good day!