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Thank you for posting here in the Community, @ChrisJUK.
To re-authorise Making Tax Digital (MTD) in QuickBooks Online (QBO) you’ll want to ensure that everything is done the following are correct:
If you still encountered the same issue or error, I suggest you reach out to our Technical Support Team. Our phone representative has the tools to securely pull up our account and double checked your company file to get into the core of the issue.
Since the Community is a public forum, contacting our support is the best option.
Here’s how to get in touch with them:
Please ensure to review their support hours to know when agents are available. This way, you can contact them at a time that is convenient for you.
Furthermore, once you got sorted out with re-authorising your MTD, you can refer to this article to submit it for VAT return: Submit a MTD for VAT return to HMRC in QuickBooks Online
Feel free to get in touch if you need further assistance with taxes. The Community always has your back. Stay safe!