Yes you are correct its for the Sept QTR,it was submitted manually mid Oct before we joined quickbooks,online the bank entry came through later on 29th Oct.I did what you suggested,(I think I had done that before from the help pages),but it still doesn't clear it.When I reconcile the bank entry is suggesting a "match" to the Journal entry.

I have attached a screen shot of the balance sheet after the journal entries have been saved,its the same after I reconcile the bank feed.Thanks