So if that method didn't actually enter a check, how do I enter the check?

Yes, the VEC requires you to pay online BUT NOT through QB.  I have always went directly to their site to file and pay.  That requirement has not changed.  Even QB's instructions say to choose "check" for the payment method if you plan to pay through their site.  Check is no longer an option and only epay can be chosen.  I have already filed and paid online through the VEC for 1st qtr.  All I am trying to do now is record the payment in my check register. If I try to create the form by selecting the VEC, then "view/pay" it only creates the form then gives me an error message that it's late an the VEC doesn't accept late filings.  I cannot go any further than this step.  I wasn't late paying or filing, I'm just late recording the transaction.  Plus what happens if for some reason I'm late in the future, it won't allow me to file or pay?? everything has worked fine for years and years and years and now this.  I'm required to upgrade my QB since I'm using 2018 by May 31.  I want my data correct before transferring so this is time sensitive since everything, including payroll functionality, will be discontinued on that date.