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Some fields appearing blank on the 941 forms might be caused by the antivirus of your computer. To resolve this, let's turn off the anti-virus.
Once turned off, update again your QuickBooks Desktop (QBDT).
Here's how:
When the update is done, restart your computer and right-click the QBDT icon then choose Run as Administrator.
Once you're signed in, let's get the latest payroll tax table.
Also, for additional information on how QuickBooks Populates the 941, you may read through this article link: Form 941.
Let me know how it goes by leaving a reply below. I'll be here if you have other concerns. Stay safe and take care always, @HKLCPA.