Thanks for joining us here in the Community, @ds tax.

At this time, the ability to track the Company HSA contribution for the 2% S-Corp shareholder is unavailable. We don't have a specific time frame on when is this going to be implemented. Rest assured our developers will evaluate preferences received and put it under consideration.

To record your taxes accurately, its recommended to seeking assistance from your tax advisor. This way, you'll be guided on how can this be done manually.

To stay in the loop about our current news and updated including product road-maps, please visit our QuickBooks Online Blog. 

If there's anything else that I can help you with, let me know. I'll make sure you're taken care of. Take care!