This is a reply specifically to Ethyl_A, writer of the most recent reply:

1.  Churches and church employees are not required in Alaska to pay or withhold Unemployment Insurance.  My problem is dealing with paying Federal Taxes:  Social Security, Medicare and Federal Income Taxes withheld.  I do not understand how State UI might keep QBO from entering Federal Tax Payments from the checking register.  

2.  How can I take a screen shot of something that is not there? If a "mark as paid" box should appear when recording our federal taxes, please give me a path that should lead me there.  

3.  I addition, I would NEVER expect to see a non-zero amount in the Payroll Tax History list, if there is not a corresponding entry in the proper bank register.  (We pay our Federal taxes out of the checking register)