I also have an item showing up in "Pay Scheduled Liabilities" but it is not due. We overpaid one(federal withholding) and underpaid another(Medicare) so the IRS sent us a refund for the net amount we overpaid. When I deposited  the refund using "Deposit a tax refund" in the pay liabilities window, it left the medicare as still owed. I have tried this fix and it takes the "Pay scheduled Liabilities" away but makes my Payroll liability balances incorrect.  Isn't there a way to just delete that line in "Pay scheduled Liabilities"?