Found this in another article that removed my overdue status.

So you paid the liability using the "Pay Scheduled Liabilities" window, but there is a residual amount showing as due that you do not owe? If that is the case, here is one way to correct this: Go to your "Pay Scheduled Liabilities" window. Select the liability for payment and view the liability check. Click on the "Expenses" tab (to the left of the "Payroll Liabilities" tab). In the "amount" field, enter the (-) amount that you need to adjust the liability  check to 0.00. For the "Account" use the "Payroll Expenses" account. Click on the "recalculate" button so the check amount is now adjusted to 0.00. Un-check the "to be printed" box and enter something meaningful to you  as the Check # (like "Q4-ADJ"). Save and Close. This will clear  your liability and adjust the expense account for any over or under accrual of the expense. I hope this helps. Let us know by clicking on the "This Solved my Question" button or posting back with more information. Thanks