They will send you corrected W2 forms.  Last year it took Intuit like 6 months to send the corrections.  So all employees in our tiny company had to file for extensions with the IRS.

Since I am the originator of this thread from like 3 years ago, my only update is that nothing has changed.  Every year, Intuit has filed incorrect W2 forms that do not properly account for the QSEHRA payments in box 12.  And every year we have to get on the phone with Intuit customer service, convince them of their error, and finally get the W2 corrections.

So yeah, this issue that this thread is talking about should not be considered as "Solved".  This an ongoing problem.