Both the Payments and the Transactions are coming into QB via two IIF files.  The Payment is going into the  checking register and the Transaction is going into Accounts Receivable.  As I just learned, the Payment and Invoice don't automatically match up.  So my AR is increasing, and the Payment on the Checking Register doesn't include the Account it should go to.  If I do a Receive Payment step to the Invoice, I don't want to double count the payment.