I am having the exact same problem, and it started about mid May 2021. For the 6 months prior my Rule for PayPal Transactions "Money In" worked fine.  That is when money came in the rule properly assigned the Transaction Type as Deposit assigning correct Income Category and PayPal Fee Split.

Now, the same rule has the transaction set at Sales Receipt, and I have to Manually go in and change to Deposit and Assign Payee and Income Account.  When I manually make the change everything works fine.

Please advise how I can get the rule to work correctly.   Thanks.