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Let's run a Verify and Rebuild on your Data in QuickBooks Desktop to troubleshoot the data. If you have Assisted Payroll, then I recommend reaching out to our Payroll Support. On the other hand, I've provided the steps below on how to do this with ease:
Verify the Data:
Rebuild the Data:
After completing these steps, let's finish this process by checking the remaining data. You can do this by going to File in the top menu, then selecting Utilities > Verify Data. Here's a Community Article that provides more information about this process: Verify and Rebuild Data in QuickBooks Desktop.
Once completed, take a look at the account balances again. Let me know if this does the trick. I'll be here if you need further assistance.