I have several transfers from checking to savings that were reconciled in checking, but not savings.   When I reconciled savings, I noticed manually entered transactions that were duplicated.    I deleted those and successfully reconciled savings.  Apparently.. the ones I deleted were already reconciled in checking.   SO now checking is not reconcilable.    I've tried both creating the transaction again, and creating a journal entry as suggested, including marking the re-created transaction as (R) reconciled in the register.   This does not get seen as a resolution to the reconcile, but adds another discrepancy to the beginning balance issue.   I'm totally confused as to how to fix this.