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Buy nowWelcome to the Community, @22551. Let me help re-enter the deleted deposits in QuickBooks Desktop (QBDT).
Leaving it as Undeposited Funds is fine. However, you’ll want to delete the payment you deposited to the bank to avoid the fund overstating in your bank. Moving forward, I recommend manually receiving the invoice payment in QuickBooks Desktop (QBDT).
Once you’ve received the payment manually, you can now deposit the funds to your bank account. All payments in the Undeposited Funds account automatically show in the Bank Deposit window. Let me show you how in your QBDT software:
You can also check this article for more details about the process: Record and make bank deposits in QuickBooks Desktop.
I’ve also added this article that you can use for future guidance in effectively reconciling your accounts in QBDT: Reconcile an account in QuickBooks Desktop.
Let me know if you have other concerns about making deposits in QBDT, It's always my pleasure to help you out. Have a wonderful day ahead!