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Thank you for getting back, @gijeet.
You need to set up the Accept Card Payments with PayPal app, your customer can then pay for their invoice with a debit card or credit card, processed by PayPal. They can also pay with their PayPal Wallet. I can guide you on how.
To learn more about the process, you can open this link: Accept PayPal and card payments using QuickBooks Online.
With regards to connecting a bank/credit card account to QuickBooks, you don't need to add your transactions into QuickBooks manually. Once the account is linked to QuickBooks, the system automatically downloads and categorises bank and credit card transactions for you. All you have to do is approve the work.
Here's an article you can read more about connecting bank and credit card accounts to QuickBooks Online.
Moreover, you can open this link to know more about how Shopify works with QuickBooks Online.
If you have any other questions when managing your transactions in QuickBooks Online, please let me know by adding a comment below. I'm always here to help. Keep safe!