Follow the order of operations. Undo the transactions in question. Transfer from the originating account to the receiving account, then match. Never Add a Transfer, transfers are always done via "Record Transfer" from originating side and then "Match" the transferred amount on the receiving side. Once you have fixed these transactions in the order of operation, re-reconcile each account to the month-end date of each impacted period, starting with the oldest month, this fixes your beginning balances. It is also not a good idea to manually re-create transactions that originally came through the bank feeds, nor is it advisable to delete transactions within the registers. You really need an Accountant to help you, as I suspect you have too many transactions in your account registers now and you have gotten yourself into a pickle with the transfers and adds.