Hello there, @SkyFall!
You'll have to match all your records in both PayPal and BOFA account so you won't miss any transactions. This way, you can easily reconcile them and you won't encounter any discrepancy along the way.
I'm adding a few references here for ideas about reviewing your transactions in your account register after categorizing them.
I'll be here if you have any other questions. Have a good one!
